Explore projects
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Code to simulate and analyze IBD-sharing between samples of a two-dimensional population.
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Georg SPERL / HYLC
MIT LicenseHomogenized Yarn-Level Cloth - microscale simulation and fitting
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Christoph Sommer / growth_shrinkage_extraction
GNU General Public License v3.0 onlyFiji script for extraction growth and shrinkage in 2D movies
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Christoph Sommer / frapdiff
GNU General Public License v3.0 or laterUpdated -
The hlab environment. Contains all of our dependencies, custom control and analysis code.
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Christoph Sommer / convert_ometiff
GNU General Public License v3.0 or laterUpdated -
imaging & optics facility / convert_ometiff
GNU General Public License v3.0 or laterArchived 0Updated -
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Yi-Lu CHEN / Cnpy
MIT LicenseUpdated -
Christoph Sommer / cellpose_counting
GNU General Public License v3.0 onlyFilter cellpose segmentations and create filtered tif and csv output of the segmentation
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Christoph Sommer / careless
GNU General Public License v2.0 or laterSimple Jupyter based user interface to [CARE] (http://csbdeep.bioimagecomputing.com/) and Noise2void
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imaging & optics facility / careless
GNU General Public License v2.0 or laterUpdated -
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imaging & optics facility / bif_care
GNU General Public License v2.0 or laterSimple IPython based user interface to CARE a toolbox for Content-aware Image Restoration.
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