GitLab

To build a linkage map for asian Artemia species (Artemia sinica and Artemia Kazakhstan) based on crosses information and RNA-seq markers.

All the scripts for the master thesis

Analysis of the Drosophila selection experiment that was done by Guy Reeves in Plön.

Simple Jupyter based user interface to [CARE] (http://csbdeep.bioimagecomputing.com/) and Noise2void

This is intended to be used to generate training dataset from many TIFF files to be used for ilastik

The hlab environment. Contains all of our dependencies, custom control and analysis code.

GIT tutorial code

Filter cellpose segmentations and create filtered tif and csv output of the segmentation

Course Materials for Advanced R Course

A simple ND2 Series exporter script

Fiji script for extraction growth and shrinkage in 2D movies

Simple wrapper for python-formats