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A collection of pipelines that can be used for different bioinformatics analyses on the IST cluster.
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Christoph Sommer / careless
GNU General Public License v2.0 or laterSimple Jupyter based user interface to [CARE] (http://csbdeep.bioimagecomputing.com/) and Noise2void
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Alois SCHLOEGL / Stimfit
GNU General Public License v2.0 or laterUpdated -
Robert Hauschild / power sensor holder
Creative Commons Attribution Non Commercial 4.0 InternationalPower sensor holders for more consistent laser power measurements.
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JonasGroup / FPulse
GNU General Public License v3.0 or laterFPulse is data acquistion system for patch-clamp recordings, based in CED1401 hardware, and IgorPro.
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IOF-group / Parts / Zeiss-Lightsheet7-objective-storage-container
GNU Affero General Public License v3.0Robust container to keep immersion objectives safe, when not mounted on the lightsheet microscope
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IOF-group / Parts / Zeiss-multiwell-chamber-stage-insert-clamp
GNU Affero General Public License v3.0Fastener for multiwell chambered slide holders on a Zeiss stage insert
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IOF-group / Parts / Leica-z-galvo-storage-stand
GNU Affero General Public License v3.0Storage platform to keep a galvo stage insert safe, when not in use
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IOF-group / Parts / Zeiss-Lightsheet7-chamber-holder
GNU Affero General Public License v3.0Stand to hold a sample chamber of a Zeiss lightheet horizontally during preparation
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Christoph Sommer / mastodon_reader
BSD 3-Clause "New" or "Revised" LicenseUpdated -
Yi-Lu CHEN / Cnpy
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IOF-group / Image-analysis / 2024-Outreach-PyxelPerfect
GNU Affero General Public License v3.0Introductory workshop for the use of Jupyter notebooks for image analysis pipelines by the Imaging and Optics Facility (IOF) team at IST Austria.
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Robert Hauschild / sample flipper
Creative Commons Attribution Non Commercial 4.0 InternationalDevice that converts any inverted microscope into a vertical microscope.
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