Commit f8c076b1 authored by Uladzislava KHAURATOVICH's avatar Uladzislava KHAURATOVICH 💬
Browse files

Update all_species_F_M_Wsnps.md

parent 01d4b56c
......@@ -31,14 +31,28 @@ java -jar $PICARD SamToFastq -I /archive3/group/vicosgrp/shared/artemia_RNAseq_r
java -jar $PICARD SamToFastq -I /archive3/group/vicosgrp/shared/artemia_RNAseq_reads/ArtemiaUrmiana/61775_AGCGATAGTAATCTTA_CC1HJANXX_3_20180406B_20180406.bam -F A.urmiana.F.head.RNA.75_1.fq -F2 A.urmiana.F.head.RNA.75_2.fq +
java -jar $PICARD SamToFastq -I /archive3/group/vicosgrp/shared/artemia_RNAseq_reads/ArtemiaUrmiana/61779_ATTCAGAAATAGAGGC_CC1HJANXX_2_20180406B_20180406.bam -F /nfs/scistore03/vicosgrp/ukhaurat/all_species_males_females_Wsnps/A.urmiana.F.head.RNA.79_1.fq -F2 /nfs/scistore03/vicosgrp/ukhaurat/all_species_males_females_Wsnps/A.urmiana.F.head.RNA.79_2.fq
java -jar $PICARD SamToFastq -I /archive3/group/vicosgrp/shared/artemia_RNAseq_reads/ArtemiaUrmiana/61779_ATTCAGAAATAGAGGC_CC1HJANXX_2_20180406B_20180406.bam -F A.urmiana.F.head.RNA.79_1.fq -F2 A.urmiana.F.head.RNA.79_2.fq +
java -jar $PICARD SamToFastq -I /archive3/group/vicosgrp/shared/artemia_RNAseq_reads/ArtemiaUrmiana/61773_TCCGCGAAGGCTCTGA_CC1HJANXX_3_20180406B_20180406.bam -F A.urmiana.M.head.RNA.73_1.fq -F2 A.urmiana.M.head.RNA.73_2.fq +
java -jar $PICARD SamToFastq -I /archive3/group/vicosgrp/shared/artemia_RNAseq_reads/ArtemiaUrmiana/61777_TCCGGAGAGTACTGAC_CC1HJANXX_2_20180406B_20180406.bam -F A.urmiana.M.head.RNA.77_1.fq -F2 A.urmiana.M.head.RNA.77_2.fq +
java -jar $PICARD SamToFastq -I /archive3/group/vicosgrp/shared/artemia_RNAseq_reads/ParthenogeneticA/NewReads/101424_TAACGATTAATAACGT_CDV98ANXX_3_20191107B_20191107.bam -F A.parAibi.F.head.RNA.424_1.fq -F2 A.parAibi.F.head.RNA.424_2.fq +
java -jar $PICARD SamToFastq -I /archive3/group/vicosgrp/shared/artemia_RNAseq_reads/ParthenogeneticA/NewReads/101425_ATGTAGACTTCTTGAA_CDV98ANXX_3_20191107B_20191107.bam -F A.parAibi.F.head.RNA.425_1.fq -F2 A.parAibi.F.head.RNA.425_2.fq +
java -jar $PICARD SamToFastq -I /archive3/group/vicosgrp/shared/artemia_RNAseq_reads/ArtemiaUrmiana/45056_GAGTGG_C9KUHANXX_7_20161021B_20161021.bam -F A.parUrm.F.head.RNA.56_1.fq -F2 A.parUrm.F.head.RNA.56_2.fq +
java -jar $PICARD SamToFastq -I /archive3/group/vicosgrp/shared/artemia_RNAseq_reads/ArtemiaUrmiana/45057_TGACCA_C9KUHANXX_7_20161021B_20161021.bam -F A.parUrm.F.head.RNA.57_1.fq -F2 A.parUrm.F.head.RNA.57_2.fq +
java -jar $PICARD SamToFastq -I /archive3/group/vicosgrp/shared/artemia_RNAseq_reads/Atanasovsko/45191_ACTGAT_C9KRJANXX_7_20161102B_20161102.bam -F A.parAta.F.head.RNA.91_1.fq -F2 A.parAta.F.head.RNA.91_2.fq +
java -jar $PICARD SamToFastq -I /archive3/group/vicosgrp/shared/artemia_RNAseq_reads/Atanasovsko/45192_GTCCGC_C9KRJANXX_7_20161102B_20161102.bam -F A.parAta.F.head.RNA.92_1.fq -F2 A.parAta.F.head.RNA.92_2.fq +
java -jar $PICARD SamToFastq -I /archive3/group/vicosgrp/shared/artemia_RNAseq_reads/ArtemiaUrmiana/61773_TCCGCGAAGGCTCTGA_CC1HJANXX_3_20180406B_20180406.bam -F /nfs/scistore03/vicosgrp/ukhaurat/all_species_males_females_Wsnps/A.urmiana.M.head.RNA.73_1.fq -F2 /nfs/scistore03/vicosgrp/ukhaurat/all_species_males_females_Wsnps/A.urmiana.M.head.RNA.73_2.fq
java -jar $PICARD SamToFastq -I /archive3/group/vicosgrp/shared/artemia_RNAseq_reads/ArtemiaUrmiana/61777_TCCGGAGAGTACTGAC_CC1HJANXX_2_20180406B_20180406.bam -F /nfs/scistore03/vicosgrp/ukhaurat/all_species_males_females_Wsnps/A.urmiana.M.head.RNA.77_1.fq -F2 /nfs/scistore03/vicosgrp/ukhaurat/all_species_males_females_Wsnps/A.urmiana.M.head.RNA.77_2.fq
sbatch bam_to_fastq.sh
Submitted batch job 24692864
A.sinica_F_head_RNA_69.bam
......
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