Commit e5f3ee4b authored by Uladzislava KHAURATOVICH's avatar Uladzislava KHAURATOVICH 💬
Browse files

Update all_species_F_M_Wsnps.md

parent e96f57e1
......@@ -74,8 +74,8 @@ A.parUrm.F.head.RNA.56_1.fq
A.parUrm.F.head.RNA.56_2.fq
A.parUrm.F.head.RNA.57_1.fq
A.parUrm.F.head.RNA.57_2.fq
A.sinica.F.head.RNA.77_1.fasta.gz
A.sinica.F.head.RNA.77_2.fasta.gz
A.sinica.M.head.RNA.77_1.fasta.gz
A.sinica.M.head.RNA.77_2.fasta.gz
A.sinica.M.head.RNA.78_1.fasta.gz
A.sinica.M.head.RNA.78_2.fasta.gz
A.sinica.F.head.RNA.69_1.fq
......@@ -146,3 +146,55 @@ done
sbatch star.sh
Submitted batch job 24754632
```
STAR --genomeDir /nfs/scistore03/vicosgrp/ukhaurat/full_assembly_analysis/index/ --readFilesIn A.kazakhstan.F.head.RNA.10_1.trim.fq A.kazakhstan.F.head.RNA.10_2.trim.fq --outSAMtype BAM SortedByCoordinate --outFileNamePrefix /nfs/scistore03/vicosgrp/ukhaurat/all.species.males.females.Wsnps/A.kazakhstan.F.head.RNA.10_ --runThreadN 10
STAR --genomeDir /nfs/scistore03/vicosgrp/ukhaurat/full_assembly_analysis/index/ --readFilesIn A.kazakhstan.M.head.RNA.03_1.trim.fq A.kazakhstan.M.head.RNA.03_2.trim.fq --outSAMtype BAM SortedByCoordinate --outFileNamePrefix /nfs/scistore03/vicosgrp/ukhaurat/all.species.males.females.Wsnps/A.kazakhstan.M.head.RNA.03_ --runThreadN 10
STAR --genomeDir /nfs/scistore03/vicosgrp/ukhaurat/full_assembly_analysis/index/ --readFilesIn A.kazakhstan.M.head.RNA.04_1.trim.fq A.kazakhstan.M.head.RNA.04_2.trim.fq --outSAMtype BAM SortedByCoordinate --outFileNamePrefix /nfs/scistore03/vicosgrp/ukhaurat/all.species.males.females.Wsnps/A.kazakhstan.M.head.RNA.04_ --runThreadN 10
STAR --genomeDir /nfs/scistore03/vicosgrp/ukhaurat/full_assembly_analysis/index/ --readFilesIn A.parAibi.F.head.RNA.424_1.trim.fq A.parAibi.F.head.RNA.424_2.trim.fq --outSAMtype BAM SortedByCoordinate --outFileNamePrefix /nfs/scistore03/vicosgrp/ukhaurat/all.species.males.females.Wsnps/A.parAibi.F.head.RNA.424_ --runThreadN 10
STAR --genomeDir /nfs/scistore03/vicosgrp/ukhaurat/full_assembly_analysis/index/ --readFilesIn A.parAibi.F.head.RNA.425_1.trim.fq A.parAibi.F.head.RNA.425_2.trim.fq --outSAMtype BAM SortedByCoordinate --outFileNamePrefix /nfs/scistore03/vicosgrp/ukhaurat/all.species.males.females.Wsnps/A.parAibi.F.head.RNA.425_ --runThreadN 10
STAR --genomeDir /nfs/scistore03/vicosgrp/ukhaurat/full_assembly_analysis/index/ --readFilesIn A.parAta.F.head.RNA.91_1.trim.fq A.parAta.F.head.RNA.91_2.trim.fq --outSAMtype BAM SortedByCoordinate --outFileNamePrefix /nfs/scistore03/vicosgrp/ukhaurat/all.species.males.females.Wsnps/A.parAta.F.head.RNA.91_ --runThreadN 10
STAR --genomeDir /nfs/scistore03/vicosgrp/ukhaurat/full_assembly_analysis/index/ --readFilesIn A.parAta.F.head.RNA.92_1.trim.fq A.parAta.F.head.RNA.92_2.trim.fq --outSAMtype BAM SortedByCoordinate --outFileNamePrefix /nfs/scistore03/vicosgrp/ukhaurat/all.species.males.females.Wsnps/A.parAta.F.head.RNA.92_ --runThreadN 10
STAR --genomeDir /nfs/scistore03/vicosgrp/ukhaurat/full_assembly_analysis/index/ --readFilesIn A.parUrm.F.head.RNA.56_1.trim.fq A.parUrm.F.head.RNA.56_2.trim.fq --outSAMtype BAM SortedByCoordinate --outFileNamePrefix /nfs/scistore03/vicosgrp/ukhaurat/all.species.males.females.Wsnps/A.parUrm.F.head.RNA.56_ --runThreadN 10
STAR --genomeDir /nfs/scistore03/vicosgrp/ukhaurat/full_assembly_analysis/index/ --readFilesIn A.parUrm.F.head.RNA.57_1.trim.fq A.parUrm.F.head.RNA.57_2.trim.fq --outSAMtype BAM SortedByCoordinate --outFileNamePrefix /nfs/scistore03/vicosgrp/ukhaurat/all.species.males.females.Wsnps/A.parUrm.F.head.RNA.57_ --runThreadN 10
STAR --genomeDir /nfs/scistore03/vicosgrp/ukhaurat/full_assembly_analysis/index/ --readFilesIn A.sinica.M.head.RNA.77_1.trim.fq A.sinica.M.head.RNA.77_2.trim.fq --outSAMtype BAM SortedByCoordinate --outFileNamePrefix /nfs/scistore03/vicosgrp/ukhaurat/all.species.males.females.Wsnps/A.sinica.M.head.RNA.77_ --runThreadN 10
STAR --genomeDir /nfs/scistore03/vicosgrp/ukhaurat/full_assembly_analysis/index/ --readFilesIn A.sinica.M.head.RNA.78_1.trim.fq A.sinica.M.head.RNA.78_2.trim.fq --outSAMtype BAM SortedByCoordinate --outFileNamePrefix /nfs/scistore03/vicosgrp/ukhaurat/all.species.males.females.Wsnps/A.sinica.M.head.RNA.78_ --runThreadN 10
STAR --genomeDir /nfs/scistore03/vicosgrp/ukhaurat/full_assembly_analysis/index/ --readFilesIn A.sinica.F.head.RNA.69_1.trim.fq A.sinica.F.head.RNA.69_2.trim.fq --outSAMtype BAM SortedByCoordinate --outFileNamePrefix /nfs/scistore03/vicosgrp/ukhaurat/all.species.males.females.Wsnps/A.sinica.F.head.RNA.69_ --runThreadN 10
STAR --genomeDir /nfs/scistore03/vicosgrp/ukhaurat/full_assembly_analysis/index/ --readFilesIn A.sinica.F.head.RNA.70_1.trim.fq A.sinica.F.head.RNA.70_2.trim.fq --outSAMtype BAM SortedByCoordinate --outFileNamePrefix /nfs/scistore03/vicosgrp/ukhaurat/all.species.males.females.Wsnps/A.sinica.F.head.RNA.70_ --runThreadN 10
STAR --genomeDir /nfs/scistore03/vicosgrp/ukhaurat/full_assembly_analysis/index/ --readFilesIn A.sinica.F.head.RNA.97_1.trim.fq A.sinica.F.head.RNA.97_2.trim.fq --outSAMtype BAM SortedByCoordinate --outFileNamePrefix /nfs/scistore03/vicosgrp/ukhaurat/all.species.males.females.Wsnps/A.sinica.F.head.RNA.97_ --runThreadN 10
STAR --genomeDir /nfs/scistore03/vicosgrp/ukhaurat/full_assembly_analysis/index/ --readFilesIn A.sinica.F.head.RNA.98_1.trim.fq A.sinica.F.head.RNA.98_2.trim.fq --outSAMtype BAM SortedByCoordinate --outFileNamePrefix /nfs/scistore03/vicosgrp/ukhaurat/all.species.males.females.Wsnps/A.sinica.F.head.RNA.98_ --runThreadN 10
STAR --genomeDir /nfs/scistore03/vicosgrp/ukhaurat/full_assembly_analysis/index/ --readFilesIn A.sinica.M.head.RNA.01_1.trim.fq A.sinica.M.head.RNA.01_2.trim.fq --outSAMtype BAM SortedByCoordinate --outFileNamePrefix /nfs/scistore03/vicosgrp/ukhaurat/all.species.males.females.Wsnps/A.sinica.M.head.RNA.01_ --runThreadN 10
STAR --genomeDir /nfs/scistore03/vicosgrp/ukhaurat/full_assembly_analysis/index/ --readFilesIn A.sinica.M.head.RNA.02_1.trim.fq A.sinica.M.head.RNA.02_2.trim.fq --outSAMtype BAM SortedByCoordinate --outFileNamePrefix /nfs/scistore03/vicosgrp/ukhaurat/all.species.males.females.Wsnps/A.sinica.M.head.RNA.02_ --runThreadN 10
STAR --genomeDir /nfs/scistore03/vicosgrp/ukhaurat/full_assembly_analysis/index/ --readFilesIn A.urmiana.F.head.RNA.79_1.trim.fq A.urmiana.F.head.RNA.79_2.trim.fq --outSAMtype BAM SortedByCoordinate --outFileNamePrefix /nfs/scistore03/vicosgrp/ukhaurat/all.species.males.females.Wsnps/A.urmiana.F.head.RNA.79_ --runThreadN 10
STAR --genomeDir /nfs/scistore03/vicosgrp/ukhaurat/full_assembly_analysis/index/ --readFilesIn A.urmiana.M.head.RNA.73_1.trim.fq A.urmiana.M.head.RNA.73_2.trim.fq --outSAMtype BAM SortedByCoordinate --outFileNamePrefix /nfs/scistore03/vicosgrp/ukhaurat/all.species.males.females.Wsnps/A.urmiana.M.head.RNA.73_ --runThreadN 10
STAR --genomeDir /nfs/scistore03/vicosgrp/ukhaurat/full_assembly_analysis/index/ --readFilesIn A.urmiana.M.head.RNA.77_1.trim.fq A.urmiana.M.head.RNA.77_2.trim.fq --outSAMtype BAM SortedByCoordinate --outFileNamePrefix /nfs/scistore03/vicosgrp/ukhaurat/all.species.males.females.Wsnps/A.urmiana.M.head.RNA.77_ --runThreadN 10
STAR --genomeDir /nfs/scistore03/vicosgrp/ukhaurat/full_assembly_analysis/index/ --readFilesIn A.urmiana.F.head.RNA.75_1.trim.fq A.urmiana.F.head.RNA.75_2.trim.fq --outSAMtype BAM SortedByCoordinate --outFileNamePrefix /nfs/scistore03/vicosgrp/ukhaurat/all.species.males.females.Wsnps/A.urmiana.F.head.RNA.75_ --runThreadN 10
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment