Commit 4a625c33 authored by Christoph Sommer's avatar Christoph Sommer
Browse files

update readme

parent 018c8571
......@@ -7,7 +7,7 @@ in Gerganova et al. https://www.biorxiv.org/content/10.1101/2020.12.18.423457v3
### 1. GUI
Open a command-line shell and type.
Open a (Anaconda) command-line shell and type.
`frapdiff`
### 2. Command-line interface
......@@ -33,7 +33,12 @@ result_dict = frapdiff.extract_frap_profiles_and_fit(
```
## Installation
### pip
### pip (developer, recommended)
1. Clone this repository
2. `cd frapdiff`
3. `pip install -e .`
### pip (current master)
pip install git+https://git.ist.ac.at/csommer/frapdiff
### Dependencies (automatically installed via pip)
......
......@@ -172,8 +172,8 @@ if len(sys.argv) >= 2:
@Gooey(
program_name="Frap DIff",
program_description="Frap2Diffusion",
program_name="FRAPdiff",
program_description="""FRAP and diffusion analysis on .tif movies containing an ImageJ ROI of the bleach rectangle.""",
tabbed_groups=True,
target="frapdiff.exe", ### https://github.com/chriskiehl/Gooey/issues/219
progress_regex=r"^#\s(?P<current>\d+)/(?P<total>\d+)\s###.*",
......
......@@ -415,7 +415,7 @@ def run_fitter(
# / (2 * fittedParameters[2] - I0 - I1),
# )
# print("I0", I0)
print(" -----------------------------------------------")
print(" ---------------------------------------------------------------")
xl = (fittedParameters[2] * (x_d - x_e) + result) / (
2 * fittedParameters[2] - I0 - I1
......
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