Commit f33d56d6 authored by Marwan ELKREWI's avatar Marwan ELKREWI
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Update SNP_calling_in_backcrossing_experiment.md

parent 2d25e5ae
## Important Details:
Samples 16-20 are asexuals, 21-30 are putative sexuals.
The same parameters were run for asexuals and sexuals, unless stated otherwise.
Steps 1-6 are processing for all analyses.
Steps 7-10 are the processing for the Pooled Analysis (Popoolation) used in the main text.
Steps 11-12 Pipeline for individual-based analyses - produces the raw VCF for downstream analysis in the supplement.
### 1. Subset reads for the pooled analysis
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