Commit 4bd4bdb6 authored by Marwan ELKREWI's avatar Marwan ELKREWI
Browse files

Update Heterozygosity_rare_male.md

parent 1eaf2f46
......@@ -57,7 +57,7 @@ We then clean the vcf file by removing the extra information on top:
```
grep -v "##" head_asex_raremale_cov5_filtered2.vcf > head_asex_raremale_cov5_filtered2_clean_kaz_genome.vcf
```
To identify the SNPs that lost heterozygosity on Chromosome 1, we use the following python commands (the file AkazScaf_AsinChromLocation.txt was produced using the steps described [here](https://git.ist.ac.at/bvicoso/zsexasex2021/-/blob/master/bestlocation.md):
To identify the SNPs that lost heterozygosity on Chromosome 1, we use the following python commands (the file AkazScaf_AsinChromLocation.txt was produced using the steps described [here](https://git.ist.ac.at/bvicoso/zsexasex2021/-/blob/master/bestlocation.md)):
```
import pandas as pd
import numpy as np
......
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