Commit d65f34ce authored by Beatriz Vicoso's avatar Beatriz Vicoso
Browse files

Update BarbCarpSynteny.md

parent d0e1010d
......@@ -20,3 +20,12 @@ module load pblat
pblat -q=dnax -t=dnax -threads=30 GWHACFJ00000000.genome.fasta Barb_orthoRNA.fa barbrna_vs_barbgenome.blat
```
Then get best hit:
```
sort -k 10 barbrna_vs_barbgenome.blat > barbrna_vs_barbgenome.blat.sorted
perl ~/2-besthitblat.pl barbrna_vs_barbgenome.blat.sorted
```
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