Commit d0e1010d authored by Beatriz Vicoso's avatar Beatriz Vicoso
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Update BarbCarpSynteny.md

parent 4d709cbb
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In: /nfs/scistore18/vicosgrp/bvicoso/FishFun/Carp2022/2-Kallisto/2-Orthogroups/BLAT_Barb
## Get barb genome
## Get barb genome and our transcriptome
https://ngdc.cncb.ac.cn/gwh/Assembly/1094/show
```
wget https://download.cncb.ac.cn/gwh/Animals/Puntigrus_tetrazona_the_genome_of_Puntius_tetrazoa_GWHACFJ00000000/GWHACFJ00000000.genome.fasta.gz
nohup wget ftp://download.cncb.ac.cn/gwh/Animals/Puntigrus_tetrazona_the_genome_of_Puntius_tetrazoa_GWHACFJ00000000/GWHACFJ00000000.genome.fasta.gz
gzip -d GWHACFJ00000000.genome.fasta.gz
```
## BLAT
```
module load pblat
pblat -q=dnax -t=dnax -threads=30 GWHACFJ00000000.genome.fasta Barb_orthoRNA.fa barbrna_vs_barbgenome.blat
```
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