Commit 3695d3a3 authored by Beatriz Vicoso's avatar Beatriz Vicoso
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Update microsynteny.md

parent 35a37fe6
......@@ -18,3 +18,15 @@ ln -s ../1-Trios/3-OrthoTables/Barb_Carp_1to2_exhaust_correctChrom.txt .
```
## Merge into usable table
First get location on chromosomes for each carp gene:
```
cat Ccarp_RNA_vs_genome.blat.sorted.besthit | awk '{print $14, $10, ($16+$17)/2}' | sort | join /dev/stdin Scaffold_chromosome.joinable | awk '{print $2, $1, $4, $3}' | sort > CarpGene_scaf_chrom_coord.joinable
```
Then merge with set of homeologs:
```
```
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