Commit c4e3a37f authored by JoseGuzman's avatar JoseGuzman

add 2018 references to documentation

parent a8559a9e
......@@ -18,7 +18,7 @@ Then, you need the `Stimfit <>`_ source code:
$ cd $HOME
$ git clone
This will download the code to a directory called *stimfit*.
It will download the code to a directory called *stimfit*.
Next, you need to generate the build system:
......@@ -38,10 +38,17 @@ Now you can configure. I strongly recommend building in a separate directory.
$ cd module
$ ../../configure --enable-module
Remember to add the argument *--with-biosig* to the configure script
if you want to have extra biomedical fileformats for stfio.
We recommend to use BioSig to read extra biomedical fileformats (see :ref:`BioSigBuild`) :
If you want to install the *stfio* module for a non-default Python distribution, such as **Anaconda Python**, use the argument *--prefix=* to specify the installation path as where your favorite Python distribution is installed. The following example will install *stfio* for Anaconda Python 2.7:
$ ../../configure --enable-module --with-biosig
Building stfio for non-default Python distributions
To install the *stfio* module in distributions such as **Anaconda Python**, use the argument *--prefix=* to specify the path where the Python distribution is installed. For example, to install *stfio* for Anaconda Python 2.7 use:
......@@ -53,6 +60,11 @@ If using virtual environment, try something like this:
$ ../../configure --enable-module --prefix=$HOME/anaconda/envs/py36
Other Python versions are also possible. For example, to install the module in your local Python version, you could use:
$ ../../configure --enable-module --prefix=$HOME/.local/lib/python2.7
Then, build and install:
......@@ -117,6 +117,8 @@ where [N] is the number of parallel builds you want to start. And finally:
and after that call **make** and **make install** as normal user. The Stimfit executable will be now in $HOME/.local
.. _BioSigBuild:
Building Stimfit with BioSig import filter
......@@ -11,6 +11,16 @@ References
`Stimfit <>`_ has been used for data analysis in the following publications. If you miss a reference to your publication, please let us know `here <!forum/stimfit>`_.
* `Hua Hu, Fabian C. Roth, David Vandael, Peter Jonas (2018)>`_ Complementary Tuning of Na+ and K+ Channel Gating Underlies Fast and Energy-Efficient Action Potentials in GABAergic Interneuron Axons. *Neuron* 10.1016/j.neuron.2018.02.024.
* `Sooyun Kim, Yoonsub Kim, Suk-Ho Lee, Won-Kyung Ho (2018)>`_ Dendritic spikes in hippocampal granule cells are necessary for long-term potentiation at the perforant path synapse. *eLife* 2018:Mar 26:7.
* `John J Marshall, Jian Xu, Anis Contractor (2018) <>`_ Kainate receptors inhibit glutamate release via mobilization of endocannabinoids in striatal direct pathway Spiny Projection Neurons (dSPNs). *J Neurosci* 38(16):1788-17.
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