Fix documentation

parent 22f0774d
......@@ -26,7 +26,7 @@ import sys, os
# Add any Sphinx extension module names here, as strings. They can be extensions
# coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
extensions = ['sphinx.ext.autodoc', 'sphinx.ext.doctest', 'sphinx.ext.intersphinx','sphinx.ext.pngmath']
extensions = ['sphinx.ext.autodoc', 'sphinx.ext.doctest', 'sphinx.ext.intersphinx','sphinx.ext.imgmath']
# Add any paths that contain templates here, relative to this directory.
templates_path = ['.templates']
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......@@ -15,70 +15,19 @@ References
2017
====
* `Schmidt-Hieber C, Toleikyte G, Aitchison L, Roth A, Clark BA, Branco T, Häusser M (2017)
<https://www.ncbi.nlm.nih.gov/pubmed/28628104>`_
Active dendritic integration as a mechanism for robust and precise grid cell firing.
*Nat Neurosci* 8:1114-1121
* `Rueckl M, Lenzi SC, Moreno-Velasquez L, Parthier D, Schmitz D, Ruediger S, Johenning FW (2017)
<https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5489661/>`_
SamuROI, a Python-Based Software Tool for Visualization and Analysis of Dynamic Time Series Imaging at Multiple Spatial Scales.
*Front Neuroinform* doi: 10.3389/fninf.2017.00044
* `Saras A, Wu VV, Brawer HJ, Tanouye MA (2017)
<http://www.genetics.org/content/206/4/1739>`_
Investigation of Seizure-Susceptibility in a Drosophila melanogaster Model of Human Epilepsy with Optogenetic Stimulation
*Genetics* 206:1739-1746.
* `Batsikadze G, Paulus W, Hasan A, Grundey J, Kuo MF, Nitsche MA (2017)
<https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5431184/>`_
Compromised neuroplasticity in cigarette smokers under nicotine withdrawal is restituted by the nicotinic α4β2-receptor partial agonist varenicline.
*Sci Rep* 7:1387.
* `Booker SA, Campbell GR, Mysiak KS, Brophy PJ, Kind PC, Mahad DJ, Wyllie DJ (2017)
<http://onlinelibrary.wiley.com/doi/10.1113/JP273581/full>`_
Loss of protohaem IX farnesyltransferase in mature dentate granule cells impairs short-term facilitation at mossy fibre to CA3 pyramidal cell synapses
*J Physiol* 195:2147-2160.
* `Akbalik G, Langebeck-Jensen K, Tushev G, Sambandan S, Rinne J, Epstein I, Cajigas 1, Vlatkovic I, Schuman EM (2017)
<http://www.tandfonline.com/doi/abs/10.1080/15476286.2016.1251541>`_
Visualization of newly synthesized neuronal RNA in vitro and in vivo using click-chemistry.
*RNA Biol.* 14:20-28.
* `Merel J, Shababo B, Naka A, Adesnik H, Paninski (2017)
<http://www.sciencedirect.com/science/article/pii/S0165027016301030>`_
Bayesian methods for event analysis of intracellular currents.
*J Neurosci Methods* 30:21-31.
* `Cross KP, Britton S, Mangulins R, Money TG, Robertson RM (2017)
<http://www.sciencedirect.com/science/article/pii/S0022191016303249>`_
Food deprivation and prior anoxic coma have opposite effects on the activity of a visual interneuron in the locust.
*J Inset Physiol* 98:336-346.
* `Gan J, Weng SM, Pernía-Andrade AJ, Csicsvari J, Jonas P (2017)
<http://www.sciencedirect.com/science/article/pii/S0896627316309606>`_
Phase-Locked Inhibition, but Not Excitation, Underlies Hippocampal Ripple Oscillations in Awake Mice In Vivo.
*Neuron* 10.1016/j.neuron.2016.12.018
* `Sinclair JL, Fischl MJ, Alexandrova O, Heβ M, Grothe B, Leibold C, Kopp-Scheinpflug C (2017)
<https://doi.org/10.1523/JNEUROSCI.3728-16.2017>`_
Sound-Evoked Activity Influences Myelination of Brainstem Axons in the Trapezoid Body.
*J Neurosci* 37 (34) 8239-8255.
* `Sambandan S, Akbalik G, Kochen L, Rinne J, Kahlstatt J, Glock C, Tushev G, Alvarez-Castelao B, Heckel A, Schuman EM (2017)
<https://doi.org/10.1126/science.aaf8995>`_
Activity-dependent spatially localized miRNA maturation in neuronal dendrites.
*Science*, Feb 10; 355:634-637.
* `Christiansen GB, Andersen KH, Riis S, Nykjaer A, Bolcho U, Jensen MS, Holm MM (2017)
<http://onlinelibrary.wiley.com/doi/10.1002/hipo.22689/full>`_
The sorting receptor SorCS3 is a stronger regulator of glutamate receptor functions compared to GABAergic mechanisms in the hippocampus
*Hippocampus* 10.1002/hipo.22689
* `Sinclair JL, Barnes-Davies M, Kopp-Scheinpflug C, Forsythe ID (2017)
<http://www.sciencedirect.com/science/article/pii/S0378595516305482>`_
Strain-specific differences in the development of neuronal excitability in the mouse ventral nucleus of the trapezoid body.
*Hear Res* 18:28-37.
* `Schmidt-Hieber C, Toleikyte G, Aitchison L, Roth A, Clark BA, Branco T, Häusser M (2017) <https://www.ncbi.nlm.nih.gov/pubmed/28628104>`_ Active dendritic integration as a mechanism for robust and precise grid cell firing. *Nat Neurosci* 8:1114-1121
* `Rueckl M, Lenzi SC, Moreno-Velasquez L, Parthier D, Schmitz D, Ruediger S, Johenning FW (2017) <https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5489661/>`_ SamuROI, a Python-Based Software Tool for Visualization and Analysis of Dynamic Time Series Imaging at Multiple Spatial Scales. *Front Neuroinform* doi: 10.3389/fninf.2017.00044
* `Saras A, Wu VV, Brawer HJ, Tanouye MA (2017) <http://www.genetics.org/content/206/4/1739>`_ Investigation of Seizure-Susceptibility in a Drosophila melanogaster Model of Human Epilepsy with Optogenetic Stimulation *Genetics* 206:1739-1746.
* `Batsikadze G, Paulus W, Hasan A, Grundey J, Kuo MF, Nitsche MA (2017) <https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5431184/>`_ Compromised neuroplasticity in cigarette smokers under nicotine withdrawal is restituted by the nicotinic α4β2-receptor partial agonist varenicline. *Sci Rep* 7:1387.
* `Booker SA, Campbell GR, Mysiak KS, Brophy PJ, Kind PC, Mahad DJ, Wyllie DJ (2017) <http://onlinelibrary.wiley.com/doi/10.1113/JP273581/full>`_ Loss of protohaem IX farnesyltransferase in mature dentate granule cells impairs short-term facilitation at mossy fibre to CA3 pyramidal cell synapses *J Physiol* 195:2147-2160.
* `Akbalik G, Langebeck-Jensen K, Tushev G, Sambandan S, Rinne J, Epstein I, Cajigas 1, Vlatkovic I, Schuman EM (2017) <http://www.tandfonline.com/doi/abs/10.1080/15476286.2016.1251541>`_ Visualization of newly synthesized neuronal RNA in vitro and in vivo using click-chemistry. *RNA Biol.* 14:20-28.
* `Merel J, Shababo B, Naka A, Adesnik H, Paninski (2017) <http://www.sciencedirect.com/science/article/pii/S0165027016301030>`_ Bayesian methods for event analysis of intracellular currents. *J Neurosci Methods* 30:21-31.
* `Cross KP, Britton S, Mangulins R, Money TG, Robertson RM (2017) <http://www.sciencedirect.com/science/article/pii/S0022191016303249>`_ Food deprivation and prior anoxic coma have opposite effects on the activity of a visual interneuron in the locust. *J Inset Physiol* 98:336-346.
* `Gan J, Weng SM, Pernía-Andrade AJ, Csicsvari J, Jonas P (2017) <http://www.sciencedirect.com/science/article/pii/S0896627316309606>`_ Phase-Locked Inhibition, but Not Excitation, Underlies Hippocampal Ripple Oscillations in Awake Mice In Vivo. *Neuron* 10.1016/j.neuron.2016.12.018
* `Sinclair JL, Fischl MJ, Alexandrova O, Heβ M, Grothe B, Leibold C, Kopp-Scheinpflug C (2017) <https://doi.org/10.1523/JNEUROSCI.3728-16.2017>`_ Sound-Evoked Activity Influences Myelination of Brainstem Axons in the Trapezoid Body. *J Neurosci* 37 (34) 8239-8255.
* `Sambandan S, Akbalik G, Kochen L, Rinne J, Kahlstatt J, Glock C, Tushev G, Alvarez-Castelao B, Heckel A, Schuman EM (2017) <https://doi.org/10.1126/science.aaf8995>`_ Activity-dependent spatially localized miRNA maturation in neuronal dendrites. *Science*, Feb 10; 355:634-637.
* `Christiansen GB, Andersen KH, Riis S, Nykjaer A, Bolcho U, Jensen MS, Holm MM (2017) <http://onlinelibrary.wiley.com/doi/10.1002/hipo.22689/full>`_ The sorting receptor SorCS3 is a stronger regulator of glutamate receptor functions compared to GABAergic mechanisms in the hippocampus *Hippocampus* 10.1002/hipo.22689
* `Sinclair JL, Barnes-Davies M, Kopp-Scheinpflug C, Forsythe ID (2017) <http://www.sciencedirect.com/science/article/pii/S0378595516305482>`_ Strain-specific differences in the development of neuronal excitability in the mouse ventral nucleus of the trapezoid body. *Hear Res* 18:28-37.
====
2016
......@@ -86,10 +35,7 @@ Strain-specific differences in the development of neuronal excitability in the m
* `Vyleta NP, Borges-Merjane C, Jonas P (2016) <https://elifesciences.org/content/5/e17977>`_ Plasticity-dependent, full detonation at hippocampal mossy fiber–CA3 pyramidal neuron synapses. *eLife* 2016;5;e17977.
* `Brunner J and Szabadics J (2016) <http://www.nature.com/articles/ncomms13033>`_ Analogue modulation of back-propagating action potentials enables dendritic hybrid signalling. *Nat Comm* Oct 5;7:13033.
* `Hanus C, Geptin H, Tushev G, Garg S, Alvarez-Castelao B, Sambandan S, Kochen L, Hafner AS, Langer JD, Schuman EM (2016) <https://elifesciences.org/content/5/e20609>`_ Unconventional secretory processing diversifies neuronal ion channel properties. *eLife* 2016;5:e20609.
* `Engel D
<https://www.jove.com/video/54601/subcellular-patch-clamp-recordings-from-somatodendritic-domain-nigral>`_
Subcellular Patch-clamp Recordings from the Somatodendritic Domain of Nigral Dopamine Neurons
*J Vis Exp* doi: 10.3791/54601
* `Engel D <https://www.jove.com/video/54601/subcellular-patch-clamp-recordings-from-somatodendritic-domain-nigral>`_ Subcellular Patch-clamp Recordings from the Somatodendritic Domain of Nigral Dopamine Neurons *J Vis Exp* doi: 10.3791/54601
* `Guzman SJ, Schlögl A, Frotscher M, Jonas P (2016) <http://science.sciencemag.org/content/353/6304/1117.long>`_ Synaptic mechanisms of pattern completion in the hippocampal CA3 network. *Science*, Sep 9; 353:1117-23.
* `Iijima Y, Behr K, Iijima T, Biemans B, Bischofberger J, Scheiffele P (2016) <http://www.nature.com/articles/srep27400>`_ Distinct Defects in Synaptic Differentiation of Neocortical Neurons in Response to Prenatal Valproate Exposure. *Sci Rep* 6:27400.
* `Janz P, Savanthrapadian S, Haussler U, Kilias A, Nestel S, Kretz O, Kirsch M, Bartos M, Egert U, Haas CA (2016) <http://cercor.oxfordjournals.org/content/early/2016/04/12/cercor.bhw093.short>`_ Synaptic Remodeling of Entorhinal Input Contributes to an Aberrant Hippocampal Network in Temporal Lobe Epilepsy. *Cerebral Cortex* bhw093.
......@@ -104,10 +50,7 @@ Subcellular Patch-clamp Recordings from the Somatodendritic Domain of Nigral Dop
2015
====
* `Kroll JR, Wong KG, Siddiqui FM, Tanouye MA (2015)
`<http://www.genetics.org/content/201/3/1087>`_
Disruption of Endocytosis with the Dynamin Mutant shibirets1 Suppresses Seizures in Drosophila.
*Genetics* 201:1087-1102.
* `Kroll JR, Wong KG, Siddiqui FM, Tanouye MA (2015) <http://www.genetics.org/content/201/3/1087>`_ Disruption of Endocytosis with the Dynamin Mutant shibirets1 Suppresses Seizures in Drosophila. *Genetics* 201:1087-1102.
* `Sultan S, Li L, Moss J, Petrelli F, Casse F, Gebara E, Lopatar J, Pfrieger FW, Bezzi P, Bischofberger J, Toni N (2015) <http://www.sciencedirect.com/science/article/pii/S0896627315009319>`_ Synaptic Integration of Adult-Born Hippocampal Neurons Is Locally Controlled by Astrocytes. *Neuron* 88(5):957-72.
* `Kowalski J, Gan J, Jonas P, Pernía-Andrade AJ (2015) <http://onlinelibrary.wiley.com/doi/10.1002/hipo.22550/abstract>`_ Intrinsic membrane properties determine hippocampal differential firing pattern in vivo in anesthetized rats. *Hippocampus* doi: 10.1002/hipo.22550.
* `Scheib U, Stehest K, Gee CE, Körschen HG, Fudim R, Oertner TG, Hegemann P. (2015) <http://stke.sciencemag.org/content/8/389/rs8.abstract>`_ The rhodopsin-guanylyl cyclase of the aquatic fungus Blastocladiella emersonii enables fast optical control of cGMP signaling. *Sci Signal* 2015 Aug 11;8(389):rs8. doi: 10.1126/scisignal.aab0611.
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