Unverified Commit 42076965 authored by Christoph Schmidt-Hieber's avatar Christoph Schmidt-Hieber Committed by GitHub

Merge pull request #81 from JoseGuzman/master

Correction of URL for 2018 publications. 
parents 8b07cc63 1a9862da
......@@ -42,7 +42,7 @@ We recommend to use BioSig to read extra biomedical fileformats (see :ref:`BioSi
::
$ ../../configure --enable-module --with-biosig
$ ../../configure --enable-module --with-biosiglite
===================================================
Building stfio for non-default Python distributions
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......@@ -129,11 +129,11 @@ Building Stimfit with BioSig import filter
We recommend to build `Stimfit <http://www.stimfit.org>`_ with the `BioSig library <http://biosig.sourceforge.net>`_ to import files in from different biomedical disciplines. It is necessary to read files acquired with `HEKA amplifiers <http://www.heka.com>`_ or with `Signal <http://ced.co.uk/products/sigovin>`_ from CED. To do it, follow this instructions:
Install libsuitesparse and libz libraries:
Install libsuitesparse, libz and dcmtk libraries:
::
sudo apt-get install libsuitesparse-dev libz-dev gawk
sudo apt-get install libsuitesparse-dev libz-dev gawk libdcmtk-dev
To avoid ABI incompatibilities, we recommend building Stimfit with the version of biosig that ships with the Stimfit source:
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......@@ -15,31 +15,31 @@ References
2018
====
* Rothman, J. S., & Silver, R. A. (2018). NeuroMatic: an integrated open-source software toolkit for acquisition, analysis and simulation of electrophysiological data. Frontiers in neuroinformatics, 12, 14.
* `Espinoza C, Guzman SJ, Zhang X, Peter Jonas (2018) <https://www.nature.com/articles/s41467-018-06899-3>`_ Parvalbumin+ interneurons obey unique connectivity rules and establish a powerful lateral-inhibition microcircuit in dentate gyrus. *Nat Comm* Nov 2;9:4605.
* Parras, A., Anta, H., Santos-Galindo, M., Swarup, V., Elorza, A., Nieto-González, J. L., ... & Rodolosse, A. (2018). Autism-like phenotype and risk gene mRNA deadenylation by CPEB4 mis-splicing. Nature, 560(7719), 441.
* `Schulz JM, Knoflach F, Hernandez MC, Bischofgerber J (2018) <https://www.nature.com/articles/s41467-018-06004-8>`_ Dendrite-targeting interneurons control synaptic NMDA-receptor activation via nonlinear α5-GABAA receptors. *Nat Comm* Sep 3;9:3576.
* Scheib, U., Broser, M., Constantin, O. M., Yang, S., Gao, S., Mukherjee, S., ... & Hegemann, P. (2018). Rhodopsin-cyclases for photocontrol of cGMP/cAMP and 2.3 Å structure of the adenylyl cyclase domain. Nature communications, 9(1), 2046.
* `Parras A, Anta H, Santos-Galindo M, Swarup V, Elorza A, Nieto-González JL, Picó S, Hernández IH, Díaz-Hernández JI, Belloc E, Rodolosse A, Parikshak NN, Peñagarikano O, Fernández-Chacón R, Irimia M, Navarro P, Geschwind DH, Méndez R, Lucas JJ (2018) <https://www.nature.com/articles/s41586-018-0423-5>`_ Autism-like phenotype and risk gene mRNA deadenylation by CPEB4 mis-splicing. Nature 560, 441-446.
* `Rifkin RA, Huyghe D, Li X, Parakala M, Aisenberg E, Moss SJ, Slesinger PA (2018) <https://www.pnas.org/content/115/40/E9479.long>`_ GIRK currents in VTA dopamine neurons control the sensitivity of mice to cocaine-induced locomotor sensitization. *PNAS* 115:9479-9488.
* Hu, H., Roth, F. C., Vandael, D., & Jonas, P. (2018). Complementary tuning of Na+ and K+ channel gating underlies fast and energy-efficient action potentials in GABAergic interneuron axons. Neuron, 98(1), 156-165.
* `Scheib U, Broser M, Constantin OM, Yang S, Gao S, Mukherjee S, Stehfest K, Nagel G, Gee CE, Hegemann P (2018) <https://www.nature.com/articles/s41467-018-04428-w>`_ Rhodopsin-cyclases for photocontrol of cGMP/cAMP and 2.3 Å structure of the adenylyl cyclase domain. *Nat Comm* May 24:9;2046.
* Marshall, J. J., Xu, J., & Contractor, A. (2018). Kainate receptors inhibit glutamate release via mobilization of endocannabinoids in striatal direct pathway spiny projection neurons. Journal of Neuroscience, 38(16), 3901-3910.
* `Hua Hu, Fabian C. Roth, David Vandael, Peter Jonas (2018) <https://www.sciencedirect.com/science/article/pii/S0896627318301454?via%3Dihub>`_ Complementary Tuning of Na+ and K+ Channel Gating Underlies Fast and Energy-Efficient Action Potentials in GABAergic Interneuron Axons. *Neuron* 10.1016/j.neuron.2018.02.024.
* Espinoza, C., Guzman, S. J., Zhang, X., & Jonas, P. (2018). Parvalbumin+ interneurons obey unique connectivity rules and establish a powerful lateral-inhibition microcircuit in dentate gyrus. Nature communications, 9(1), 4605.
* `John J Marshall, Jian Xu, Anis Contractor (2018) <http://www.jneurosci.org/content/early/2018/03/14/JNEUROSCI.1788-17.2018>`_ Kainate receptors inhibit glutamate release via mobilization of endocannabinoids in striatal direct pathway Spiny Projection Neurons (dSPNs). *J Neurosci* 38(16):1788-17.
* Rifkin, R. A., Huyghe, D., Li, X., Parakala, M., Aisenberg, E., Moss, S. J., & Slesinger, P. A. (2018). GIRK currents in VTA dopamine neurons control the sensitivity of mice to cocaine-induced locomotor sensitization. Proceedings of the National Academy of Sciences, 115(40), E9479-E9488.
* `Grimm C, Silapetere A, Vogt A, Bernal Sierra YA, Hegemann P (2018) <https://www.nature.com/articles/s41598-018-27690-w>`_ Electrical properties, substrate specificity and optogenetic potential of the engineered light-driven sodium pump eKR2. *Sci Rep* 8:9316.
* Grimm, C., Silapetere, A., Vogt, A., Sierra, Y. A. B., & Hegemann, P. (2018). Electrical properties, substrate specificity and optogenetic potential of the engineered light-driven sodium pump eKR2. Scientific reports, 8(1), 9316.
* `Turko P, Groberman K, Browa F, Cobb S, Vida I (2018) <https://academic.oup.com/cercor/article/29/3/1230/4841690>`_ Differential Dependence of GABAergic and Glutamatergic Neurons on Glia for the Establishment of Synaptic Transmission. *Cereb Cortex* 3:1230-1243.
* Schulz, J. M., Knoflach, F., Hernandez, M. C., & Bischofberger, J. (2018). Dendrite-targeting interneurons control synaptic NMDA-receptor activation via nonlinear α5-GABA A receptors. Nature communications, 9(1), 3576.
* `Sooyun Kim, Yoonsub Kim, Suk-Ho Lee, Won-Kyung Ho (2018) <https://elifesciences.org/articles/35269>`_ Dendritic spikes in hippocampal granule cells are necessary for long-term potentiation at the perforant path synapse. *eLife* 2018:Mar 26:7.
* Booker, S. A., Domanski, A. P., Dando, O. R., Jackson, A. D., Isaac, J. T., Hardingham, G. E., ... & Kind, P. C. (2018). Altered dendritic spine function and integration in a mouse model of Fragile X Syndrome. bioRxiv, 396986.
* Kim, S., Kim, Y., Lee, S. H., & Ho, W. K. (2018). Dendritic spikes in hippocampal granule cells are necessary for long-term potentiation at the perforant path synapse. eLife, 7, e35269.
* `Ortega-de San Luis C, Sanchez-Garcia MA, Nieto-Gonzalez JL, García-Junco-Clemente P, Montero-Sanchez A, Fernandez-Chacon R, Pascual A (2018) <https://onlinelibrary.wiley.com/doi/full/10.1111/acel.12821>`_ Substantia nigra dopaminergic neurons and striatal interneurons are engaged in three parallel but interdependent postnatal neurotrophic circuits. *Aging Cell* Oct;17(5):e12821.
* Ortega‐de San Luis, C., Sanchez‐Garcia, M. A., Nieto‐Gonzalez, J. L., García‐Junco‐Clemente, P., Montero‐Sanchez, A., Fernandez‐Chacon, R., & Pascual, A. (2018). Substantia nigra dopaminergic neurons and striatal interneurons are engaged in three parallel but interdependent postnatal neurotrophic circuits. Aging cell, 17(5), e12821.
* `Rothman JS and Silver RA (2018) <https://www.frontiersin.org/articles/10.3389/fninf.2018.00014/full>`_ NeuroMatic: An Integrated Open-Source Software Toolkit for Acquisition, Analysis and Simulation of Electrophysiological Data. *Front Neuroinform* doi: 10.3389/fninf.2018.00014.
* Turko, P., Groberman, K., Browa, F., Cobb, S., & Vida, I. (2018). Differential Dependence of GABAergic and Glutamatergic Neurons on Glia for the Establishment of Synaptic Transmission. Cerebral Cortex, 29(3), 1230-1243.
* Booker, S. A., Domanski, A. P., Dando, O. R., Jackson, A. D., Isaac, J. T., Hardingham, G. E., ... & Kind, P. C. (2018). Altered dendritic spine function and integration in a mouse model of Fragile X Syndrome. bioRxiv, 396986.
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2017
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